Datasets example — mayavi 4.7.1 documentation

# Datasets example

A Mayavi example to show the different data sets. See Data representation in Mayavi for a discussion.

The following images are created:

ImageData RectilinearGrid | StructuredGrid UnstructuredGrid

Python source code: `datasets.py`

    # Author: Gael Varoquaux <gael dot varoquaux at normalesup.org>
    # Copyright (c) 2008, Enthought, Inc.
    # License: BSD style.

    from numpy import array, random, linspace, pi, ravel, cos, sin, empty
    from tvtk.api import tvtk

    from mayavi.sources.vtk_data_source import VTKDataSource

    from mayavi import mlab

    def image_data():
        data = random.random((3, 3, 3))
        i = tvtk.ImageData(spacing=(1, 1, 1), origin=(0, 0, 0))
        i.point_data.scalars = data.ravel()
        i.point_data.scalars.name = 'scalars'
        i.dimensions = data.shape
        return i

    def rectilinear_grid():
        data = random.random((3, 3, 3))
        r = tvtk.RectilinearGrid()
        r.point_data.scalars = data.ravel()
        r.point_data.scalars.name = 'scalars'
        r.dimensions = data.shape
        r.x_coordinates = array((0, 0.7, 1.4))
        r.y_coordinates = array((0, 1, 3))
        r.z_coordinates = array((0, .5, 2))
        return r

    def generate_annulus(r, theta, z):
        """ Generate points for structured grid for a cylindrical annular
            volume.  This method is useful for generating a unstructured
            cylindrical mesh for VTK (and perhaps other tools).
        """
        # Find the x values and y values for each plane.
        x_plane = (cos(theta)*r[:,None]).ravel()
        y_plane = (sin(theta)*r[:,None]).ravel()

        # Allocate an array for all the points.  We'll have len(x_plane)
        # points on each plane, and we have a plane for each z value, so
        # we need len(x_plane)*len(z) points.
        points = empty([len(x_plane)*len(z),3])

        # Loop through the points for each plane and fill them with the
        # correct x,y,z values.
        start = 0
        for z_plane in z:
            end = start+len(x_plane)
            # slice out a plane of the output points and fill it
            # with the x,y, and z values for this plane.  The x,y
            # values are the same for every plane.  The z value
            # is set to the current z
            plane_points = points[start:end]
            plane_points[:,0] = x_plane
            plane_points[:,1] = y_plane
            plane_points[:,2] = z_plane
            start = end

        return points

    def structured_grid():
        # Make the data.
        dims = (3, 4, 3)
        r = linspace(5, 15, dims[0])
        theta = linspace(0, 0.5*pi, dims[1])
        z = linspace(0, 10, dims[2])
        pts = generate_annulus(r, theta, z)
        sgrid = tvtk.StructuredGrid(dimensions=(dims[1], dims[0], dims[2]))
        sgrid.points = pts
        s = random.random((dims[0]*dims[1]*dims[2]))
        sgrid.point_data.scalars = ravel(s.copy())
        sgrid.point_data.scalars.name = 'scalars'
        return sgrid

    def unstructured_grid():
        points = array([[0,1.2,0.6], [1,0,0], [0,1,0], [1,1,1], # tetra
                        [1,0,-0.5], [2,0,0], [2,1.5,0], [0,1,0],
                        [1,0,0], [1.5,-0.2,1], [1.6,1,1.5], [1,1,1], # Hex
                        ], 'f')
        # The cells
        cells = array([4, 0, 1, 2, 3, # tetra
                       8, 4, 5, 6, 7, 8, 9, 10, 11 # hex
                       ])
        # The offsets for the cells, i.e. the indices where the cells
        # start.
        offset = array([0, 5])
        tetra_type = tvtk.Tetra().cell_type # VTK_TETRA == 10
        hex_type = tvtk.Hexahedron().cell_type # VTK_HEXAHEDRON == 12
        cell_types = array([tetra_type, hex_type])
        # Create the array of cells unambiguously.
        cell_array = tvtk.CellArray()
        cell_array.set_cells(2, cells)
        # Now create the UG.
        ug = tvtk.UnstructuredGrid(points=points)
        # Now just set the cell types and reuse the ug locations and cells.
        ug.set_cells(cell_types, offset, cell_array)
        scalars = random.random(points.shape[0])
        ug.point_data.scalars = scalars
        ug.point_data.scalars.name = 'scalars'
        return ug

    def polydata():
        # The numpy array data.
        points = array([[0,-0.5,0], [1.5,0,0], [0,1,0], [0,0,0.5],
                        [-1,-1.5,0.1], [0,-1, 0.5], [-1, -0.5, 0],
                        [1,0.8,0]], 'f')
        triangles = array([[0,1,3], [1,2,3], [1,0,5],
                           [2,3,4], [3,0,4], [0,5,4], [2, 4, 6],
                            [2, 1, 7]])
        scalars = random.random(points.shape)

        # The TVTK dataset.
        mesh = tvtk.PolyData(points=points, polys=triangles)
        mesh.point_data.scalars = scalars
        mesh.point_data.scalars.name = 'scalars'
        return mesh

    def view(dataset):
        """ Open up a mayavi scene and display the dataset in it.
        """
        fig = mlab.figure(bgcolor=(1, 1, 1), fgcolor=(0, 0, 0),
                          figure=dataset.class_name[3:])
        surf = mlab.pipeline.surface(dataset, opacity=0.1)
        mlab.pipeline.surface(mlab.pipeline.extract_edges(surf),
                                color=(0, 0, 0), )

    @mlab.show
    def main():
        view(image_data())
        view(rectilinear_grid())
        view(structured_grid())
        view(unstructured_grid())
        view(polydata())

    if __name__ == '__main__':
        main()